J Plant Ecol ›› Advance articles     DOI:10.1093/jpe/rtag174

• Research Article •     Next Articles

Differential responses of bulk soil, rhizosphere, and root endosphere microbial communities to aridity: a case study of Lespedeza davurica

Jia Wen1, Xiaoqian Gong1, Le Ma1, Hui Zhou1, Qing Zhang1,2,3,4*   

  1. 1 Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau, School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
    2 Collaborative Innovation Center for Grassland Ecological Security (Jointly Supported by the Ministry of Education of China and Inner Mongolia Autonomous Region), Hohhot 010021, China
    3 Inner Mongolia Key Laboratory of Grassland Ecology and the Candidate State Key Laboratory of Ministry of Science and Technology, Hohhot 010021, China
    4 Inner Mongolia Agro-Pastoral Ecotone Integrated Ecosystem Field Scientific Observation and Research Station, Hohhot 010021, China
    * Corresponding author: Qing Zhang, E-mail: qzhang82@163.com
  • Received:2026-01-28 Accepted:2026-07-10 Published:2026-08-05
  • Supported by:
    This work was supported by the Inner Mongolia Autonomous Region Major Special Project [grant number 2024JBGS0011], the Inner Mongolia Autonomous Region Science and Technology Program Project [grant number 2025KYPT0012] and the Inner Mongolia Autonomous Region Education Department Project [grant number NMGIRT2409].

Abstract: Soil and root-associated microorganisms are fundamental drivers of plant nutrition and environmental adaptation. However, along aridity gradients, the response patterns and regulatory mechanisms of microbial assemblages across bulk soil, rhizosphere soil, and root endosphere remain largely unclear. In this study, we focused on the leguminous plant Lespedeza davurica. We synchronously collected bulk soil, rhizosphere soil, and root samples from 27 sites along a natural aridity gradient of approximately 1200 km across the Inner Mongolian grasslands. By integrating high-throughput sequencing with structural equation modeling, we examined how aridity affects bacterial and fungal diversity and community composition across different ecological niches. The results indicated that aridity directly and significantly reduced bulk soil and rhizosphere fungal diversity. Aridity indirectly suppressed root endosphere bacterial diversity through changes in soil properties. Total nitrogen, soil organic carbon, and soil water content were identified as significant predictors of root endosphere bacterial diversity, whereas total nitrogen was a significant predictor of fungal diversity in both bulk soil and rhizosphere soil. Aridity altered microbial community composition across different ecological niches. The relative abundance of Proteobacteria increased significantly, whereas Acidobacteria showed a significant decline in the root endosphere. In contrast, the relative abundance of Zygomycota decreased significantly in bulk soil and rhizosphere soil. Under intensifying aridity, plants might selectively recruit specific microorganisms via a “cry-for-help” strategy. This study reveals niche-specific microbial responses to aridity across bulk soil, rhizosphere soil, and root endosphere in the grassland ecosystem, providing new insights into microbial adaptive strategies under aridity conditions.

Aridity reshapes microbial diversity across soil and root-associated niches. This study demonstrates that microbial diversity exhibits niche-specific responses to increasing aridity. Aridity directly reduced fungal diversity in bulk soil and rhizosphere soil but indirectly affected root endosphere bacterial diversity through changes in soil properties.

Key words: Aridity, Lespedeza davurica, Root-associated microbiota, Microbial diversity, Community composition