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Research Articles

glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models

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  • 1 College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China, 2 Research Center of Quantitative Ecology, Nanjing Forestry University, Nanjing 210037, China, 3 Department of Health and Environmental Sciences, Xi’an JiaotongLiverpool University, Suzhou 215123, China, 4 State Key Laboratory of Urban and Regional Ecology, Research Center for EcoEnvironmental Sciences, Chinese Academy of Sciences, Beijing 100085, China, 5 State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China, 6 University of Chinese Academy of Sciences, Beijing 100049, China

    *Corresponding author. E-mail: lai@njfu.edu.cn

Received date: 2022-10-31

  Accepted date: 2022-11-01

  Online published: 2022-11-24

Abstract

Generalized linear mixed models (GLMMs) have been widely used in contemporary ecology studies. However, determination of the relative importance of collinear predictors (i.e. fixed effects) to response variables is one of the challenges in GLMMs. Here, we developed a novel R package, glmm.hp, to decompose marginal R2 explained by fixed effects in GLMMs. The algorithm of glmm.hp is based on the recently proposed approach ‘average shared variance’ i.e. used for multivariate analysis. We explained the principle and demonstrated the use of this package by simulated dataset. The output of glmm.hp shows individual marginal R2s that can be used to evaluate the relative importance of predictors, which sums up to the overall marginal R2. Overall, we believe the glmm.hp package will be helpful in the interpretation of GLMM outcomes.

Cite this article

Jiangshan Lai, Yi Zou, Shuang Zhang, Xiaoguang Zhang and Lingfeng Mao . glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models[J]. Journal of Plant Ecology, 2022 , 15(6) : 1302 -1307 . DOI: 10.1093/jpe/rtac096

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